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Agent

Agent handles research tasks end to end. Give it a question, a literature review, or a data extraction job and it will search your library, the web, and academic databases, synthesize what it finds, and deliver cited, verifiable results.

Import my Zotero library into Anara

Imported 847 files from Zotero

All 847 references are now in your library. Want me to organise them into folders by topic?

Yes — make folders for ML, biology, and chemistry papers

Created folder · ML papers
Created folder · Biology
Created folder · Chemistry
Moved 312 files to ML papers
Moved 218 files to Biology
Moved 196 files to Chemistry

Done. ML papers has 312 files, Biology has 218, Chemistry has 196. 121 references stayed in the root inbox — they didn't have enough metadata to confidently route. Want me to flag those for review?

Import and move

Agent can import files, create folders, or reorganize your library — turning natural language into real changes to your workspace.

Gemini 3 Flash
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Grok 4
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Compare the side-effect tables inTinnitus 2024.pdfandMigraine treatments 2024with the latest case reports fromPubMedand pull anything that mentions GLP-1 or auditory side-effects.
AutoLibraryWeb

Add context

Point the agent at exactly what matters. @mention specific files, folders, or connectors to scope any question.

Compare GLP-1 long-term safety findings across recent trials
Pull peer-reviewed long-term safety data from PubMedFound 14 papers · 6 cite multi-year follow-up
Scan Zotero connector for recent meta-analyses218 references searched · 4 relevant

Deep mode

For complex questions, Anara runs sub-agents in parallel to explore your library and the web, and synthesizes a comprehensive answer.

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Access millions of papers

Agent searches 500M+ papers across academic databases like PubMed, arXiv and JSTOR, iteratively reading and adapting its search strategy based on what it discovers.

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Control your sources

Pick what the agent can access. Add or remove your library and the web as sources per conversation. Files you have in view are always included as context.

References

APA
  • [1]Wang, G., Li, J., Wei, M., Sun, R., & Yang, X. (2024). Hierarchical Reasoning Model: a recurrent architecture for computational depth. arXiv preprint arXiv:2406.01234.
  • [2]Ocampo, A., Reddy, P., Martínez-Redondo, P., Platero-Luengo, A., Hatanaka, F., & Hishida, T. (2016). In vivo amelioration of age-associated hallmarks by partial reprogramming. Cell, 167(7), 1719–1733.
  • [3]Skoulidis, F., Li, B. T., Dy, G. K., Price, T. J., Falchook, G. S., & Wolf, J. (2021). Sotorasib for lung cancers with KRAS p.G12C mutation. New England Journal of Medicine, 384(25), 2371–2381.

Reference lists

Generate a fully formatted bibliography from any conversation. Open it as a note, edit it, or export directly.

Inspired by this hierarchical1 and multi-timescale biological architecture, we propose the Hierarchical Reasoning Model. HRM is a recurrent architecture that attains significantly greater effective computational depth2 across timescales without the latency overhead of token-level chain-of-thought3.

Across nine reasoning benchmarks, HRM matches or exceeds chain-of-thought baselines while using roughly an order of magnitude fewer tokens at inference4. The gains compound on multi-step mathematical proofs, where the model can recurse over partial results instead of regenerating intermediate scratch-work for every step.

Closer inspection of the attention patterns5 shows that early layers cluster around entity binding while deeper layers route through compressed, timescale-specific channels — consistent with the hierarchical organisation observed in cortical microcircuits6.

Hierarchical Reasoning Model

arxiv.org · 2024

"…we propose HRM, a novel recurrent architecture that attains significant computational depth…"

Citations

Every answer includes inline citations that link to the exact passage in the source document. Choose numbered citations or your preferred academic format.

File Intelligence

Anara reads your documents the way you would. Text, figures, tables, handwriting, scanned pages. Everything is processed, indexed, and made searchable.

5 files imported
  • phase-ii-readout.pdf
  • protocol-amendments.docx
  • safety-tables.xlsx
  • asco-2024-slides.pptx
  • patient-recording.mp4

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Hierarchical Reasoning Model: a recurrent architecture for computational depth

Wang G., Li J., Wei M., Sun R., Yang X.

"…we propose the Hierarchical Reasoning Model (HRM), a novel recurrent architecture that attains significant computational depth across timescales without the latency overhead of token-level chain-of-thought…"

Published 2024|arXiv preprint|pp. 1–18

LLM optimized

Intelligent document indexing to ensure Agent can always reference the original passage information was drawn from.

Histopathology Report

Microscopic examination reveals focal epithelial dysplasia.

Interpretation

Mild lymphocytic infiltration, chronic inflammation.

No evidence of dysplasia or malignant cells.

Recommend follow-up biopsy in 6 months.

Optical character recognition

OCR for scanned PDFs, image files, screenshots, and handwritten notes.

Salescall-summary.mp3

Tau-PET grand rounds

0:00

We followed three hundred twelve participants on the amyloid-positive continuum with tau-PET over thirty-six months.

0:04

Mean entorhinal uptake reached 1.42 in MCI versus 1.06 in controls — predicted decline at hazard 3.7.

Transcription

Video and audio uploads are automatically transcribed so you can ask questions about a lecture the same way you'd ask about a paper.

Semantic image recognition

Figures, charts, diagrams, and tables are analyzed by our AI agents to make visual content searchable and queryable in chat.

Library

Import from anywhere, organize however you want. Anara indexes every file in your library so any answer is one question away, whether you're working with ten files or ten thousand.

Title
Authors
Added
Sotorasib in pre-treated NSCLCSkoulidis F.Today
KRYSTAL-1: adagrasib phase 1 trialJänne P.A.Yesterday
Acquired resistance to G12C inhibitionAwad M.M.Mar 4
MEK inhibitor + KRAS combinationsSolanki H.Mar 5
Pembrolizumab phase III safetyReck M.Mar 6
KEAP1/STK11 and immune checkpointRicciuti B.Mar 6
TMB as a biomarker for PD-1 blockadeRizvi N.A.Mar 7

Built for scale

Chat with a single file, a folder, or your entire library of up to 10,000 documents in one conversation.

File details

File type

Document

Title

Hierarchical Reasoning Model

Authors

G. Wang, J. Li, Y. Sun

Publication

arXiv preprint

Volume

2506.21734

Published

June 26, 2025

DOI

10.48550/arXiv.2506.21734

Metadata extraction

When you upload Anara automatically extracts metadata like title, authors and publication date, and generates an AI summary.

arxiv.org/abs/2406.01234

arXiv:2406.01234 · cs.LG

Hierarchical Reasoning Model: a recurrent architecture for computational depth

G. Wang, J. Li, Y. Sun, X. Chen, R. Yang, M. Wei

Abstract

Inspired by hierarchical and multi-timescale biological architecture, we propose the Hierarchical Reasoning Model (HRM), a recurrent architecture that attains greater computational depth without per-token chain-of-thought reasoning across model depth.

AAnara clipper
Reasoning research

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Save PDFs, webpages and YouTube videos to your library in a single click with the Anara Chrome extension.

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Tags

Create custom tags with colors to organize your documents, and apply them across your entire library.

known as estrogen replacement therapy, helps women to suffer less of these risks. There are various methods of taking the hormones. The oral route is the most common delivery method. Despite the proven efficacy of oral route, 60–90% of oral estrogen is lost in the gut wall and liver. The relatively high doses of estrogen required to overcome this is the reason a number of non-oral routes have been developed in clinical practice.
K
Kevinjust now

Important part of the story

Annotations

Highlight passages and leave comments as you read, then filter by color to find what you need.

Sotorasib for previously treated KRAS G12C-mutated NSCLCSkoulidis et al.
Adagrasib in patients with KRAS G12C-mutated lung cancerJänne et al.
Acquired resistance to KRAS G12C inhibitionAwad et al.
Combination of MEK inhibitor with KRAS G12CHallin et al.
Predictive biomarkers in non-small-cell lung cancerChen et al.
Phase II trial outcomes for novel KRAS inhibitorRamalingam et al.
Long-term follow-up of advanced therapyGaron et al.
Tumor microenvironment in KRAS-mutated tumorsPark et al.
3 selectedExport
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Select items from your library and export as BibTeX, CSV, or LaTeX.

Editor

A rich text editor purpose-built for scientific writing. Draft alongside your sources, let Anara find citations for you as you write, and use AI to refine without losing your voice.

Posterior probability is given by Bayes' rule, so updating the prior over a parameter reduces to a normalising constant computed below.

abf(x) dx = F(b) − F(a)
\int_{a}^{b} f(x)\,dx = F(b) - F(a)Done

LaTeX and math expressions

Full LaTeX support throughout the editor. Write equations inline or in display blocks.

Idiopathic sensorineural hearing loss accounts for only 15% of cases in the population.

Find citations
OnlineRelevance
sensorineural hearing loss

Tinnitus: Clinical Insights in Its Pathophysiology

Berthold Langguth · 2024

Search citation

Highlight a claim, click Search citation and Anara will search your library and the web semantically to find where you read it.

The hippocampus has long been viewed as a structure central to episodic memory, yet recent fMRI work suggests its contribution extends well into spatial reasoning and decision-making.

The hierarchical reasoning model encodes inputs through a recurrent loop and attains greater computational depth without per-token chain-of-thought reasoning.

Make this less jargon-y
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Summarize, expand, simplify, translate, or rewrite selected text without leaving the editor.

KRAS G12C: Phase II memo

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Export your work as DOCX, PDF, LaTeX, BibTeX, or CSV with full citation formatting maintained.

Collaboration

Build a shared research workspace for your team. Anara keeps your library, documents, and organization in sync across everyone, so no one is working from outdated files or missing context.

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Each workspace combines shared and private folders. Shared folders are visible to everyone, private folders are yours alone.

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Member management

Invite members, assign roles, and manage permissions from one place. Add or remove people as your team changes.

MSJAKL6 seats
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One subscription covers your whole team. Add seats as you grow, manage everything from a single invoice.

CollaboratorCan add and remove files, invite members and change folder settings
OwnerFull control over the folder including ability to delete it
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ViewerCan view files and members only

Folder sharing

Share specific folders with specific people. Control who can view, edit, or add to each part of the workspace.

Where people and AI do research work together